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graph neural network (4) molecular relational learning (3) deep learning (3) large language model (3) mass spectrometry (3) multi-task learning (2) peptide sequencing (2) molecular graph (2) attention mechanism (1) cross-modal learning (1) information bottleneck (1) multi-modal learning (1) chain-of-thought reasoning (1) time series (1) question answering (1) few-shot learning (1) generative model (1) molecular geometry (1) missing data imputation (1) temporal reasoning (1)