TRACI: A Data-centric Approach for Multi-Domain Generalization on Graphs

Abstract Graph neural networks (GNNs) have gained superior performance in graph-based prediction tasks with a variety of applications such as social analysis and drug discovery. Despite the remarkable progress, their performance often degrades on test graphs with distribution shifts. Existing domain adaptation methods rely on unlabeled test graphs during optimization, limiting their applicability to graphs in the wild. Towards this end, this paper studies the problem of multi-domain generalization on graphs, which utilizes multiple source graphs to learn a GNN with high performance on unseen target graphs. We propose a new approach named Topological Adversarial Learning with Prototypical Mixup (TRACI) to solve the problem. The fundamental principle behind our TRACI is to produce virtual adversarial and mixed graph samples from a data-centric view. In particular, TRACI enhances GNN generalization by employing a gradient-ascent strategy that considers both label prediction entropy and graph topology to craft challenging adversarial samples. Additionally, it generates domain-agnostic node representations by characterizing class-graph pair prototypes through latent distributions and applying multi-sample prototypical Mixup for distribution alignment across graphs. We further provide theoretical analysis showing that TRACI reduces the model's excess risk. Extensive experiments on various benchmark datasets demonstrate that TRACI outperforms state-of-the-art baselines, validating its effectiveness.