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Bioinformatics

638 directly classified papers

Papers per year

Papers

Probabilistic Programming for Birth-Death Models of Evolution Using an Alive Particle Filter with Delayed Sampling UAI 2019
End-to-end Training of Deep Probabilistic CCA on Paired Biomedical Observations UAI 2019
Towards Gene Function Prediction via Multi-Networks Representation Learning AAAI 2019
BioRelEx 1.0: Biological Relation Extraction Benchmark ACL 2019
Neural Dynamics Discovery via Gaussian Process Recurrent Neural Networks UAI 2019
Multiplicative local linear hazard estimation and best one-sided cross-validation JMLR 2019
Dependent relevance determination for smooth and structured sparse regression JMLR 2019
Maximum Likelihood for Gaussian Process Classification and Generalized Linear Mixed Models under Case-Control Sampling JMLR 2019
A Multitask Multiple Kernel Learning Algorithm for Survival Analysis with Application to Cancer Biology ICML 2019
NeVAE: A Deep Generative Model for Molecular Graphs AAAI 2019
A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes AAAI 2019
A Fast Machine Learning Workflow for Rapid Phenotype Prediction from Whole Shotgun Metagenomes AAAI 2019
DEFSI: Deep Learning Based Epidemic Forecasting with Synthetic Information AAAI 2019
Evaluation of Scientific Elements for Text Similarity in Biomedical Publications ACL 2019
Embedding Biomedical Ontologies by Jointly Encoding Network Structure and Textual Node Descriptors ACL 2019
Exploring Diachronic Changes of Biomedical Knowledge using Distributed Concept Representations ACL 2019
YNU-junyi in BioNLP-OST 2019: Using CNN-LSTM Model with Embeddings for SeeDev Binary Event Extraction EMNLP 2019
Using Snomed to recognize and index chemical and drug mentions. EMNLP 2019
Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019 EMNLP 2019
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes EMNLP 2019
Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical Literature EMNLP 2019
UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition EMNLP 2019
Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation Task EMNLP 2019
Recognizing UMLS Semantic Types with Deep Learning EMNLP 2019
ReAl-LiFE: Accelerating the Discovery of Individualized Brain Connectomes on GPUs AAAI 2019