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Bioinformatics

638 directly classified papers

Papers per year

Papers

A Framework for Developing and Evaluating Word Embeddings of Drug-named Entity ACL 2018
MeSH-based dataset for measuring the relevance of text retrieval ACL 2018
Simultaneously Self-Attending to All Mentions for Full-Abstract Biological Relation Extraction NAACL 2018
A Neural Autoencoder Approach for Document Ranking and Query Refinement in Pharmacogenomic Information Retrieval ACL 2018
Sub-word information in pre-trained biomedical word representations: evaluation and hyper-parameter optimization ACL 2018
Recognizing Complex Entity Mentions: A Review and Future Directions ACL 2018
End-to-end Symmetry Preserving Inter-atomic Potential Energy Model for Finite and Extended Systems NIPS 2018
Joint Learning of Phenotypes and Diagnosis-Medication Correspondence via Hidden Interaction Tensor Factorization IJCAI 2018
A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models ICML 2018
WHInter: A Working set algorithm for High-dimensional sparse second order Interaction models ICML 2018
Robust and Scalable Models of Microbiome Dynamics ICML 2018
Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin NIPS 2017
Gradients of Generative Models for Improved Discriminative Analysis of Tandem Mass Spectra NIPS 2017
Correlation Analysis of Chronic Obstructive Pulmonary Disease (COPD) and its Biomarkers Using the Word Embeddings IJCNLP 2017
Learning what to read: Focused machine reading EMNLP 2017
LABDA at SemEval-2017 Task 10: Extracting Keyphrases from Scientific Publications by combining the BANNER tool and the UMLS Semantic Network SEMEVAL 2017
Extraction of Gene-Environment Interaction from the Biomedical Literature IJCNLP 2017
Distant Supervision for Relation Extraction beyond the Sentence Boundary EACL 2017
A Computational Analysis of the Language of Drug Addiction EACL 2017
When can Multi-Site Datasets be Pooled for Regression? Hypothesis Tests, $\ell_2$-consistency and Neuroscience Applications ICML 2017
Identifying Protein-protein Interactions in Biomedical Literature using Recurrent Neural Networks with Long Short-Term Memory IJCNLP 2017
A Mutually-Dependent Hadamard Kernel for Modelling Latent Variable Couplings ACML 2017
Target Curricula via Selection of Minimum Feature Sets: a Case Study in Boolean Networks JMLR 2017
Entity Extraction in Biomedical Corpora: An Approach to Evaluate Word Embedding Features with PSO based Feature Selection EACL 2017
Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data ICML 2016