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Bioinformatics

638 directly classified papers

Papers per year

Papers

MultiMorph: On-demand Atlas Construction CVPR 2025
AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering COLING 2025
Improving Cancer Gene Prediction by Enhancing Common Information Between the PPI Network and Gene Functional Association AAAI 2025
PreClinIE: An Annotated Corpus for Information Extraction in Preclinical Studies ACL 2025
GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration NAACL 2025
Towards Better Multi-task Learning: A Framework for Optimizing Dataset Combinations in Large Language Models NAACL 2025
Automatic Annotation Augmentation Boosts Translation between Molecules and Natural Language NAACL 2025
Unsupervised Identification of Protein Compositions and Conformations via Implicit Content-Transformation Disentanglement ICCV 2025
Integrating Biological Knowledge for Robust Microscopy Image Profiling on De Novo Cell Lines ICCV 2025
ASCENT: Annotation-free Self-supervised Contrastive Embeddings for 3D Neuron Tracking in Fluorescence Microscopy ICCV 2025
3D Denoisers Are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation AAAI 2025
scRAG: Hybrid Retrieval-Augmented Generation for LLM-based Cross-Tissue Single-Cell Annotation ACL 2025
M²N: A Progressive Macro-to-Micro 3D Modeling Scheme for Unveiling Drug-Target Affinity AAAI 2025
Robust Heterogeneous Graph Classification for Molecular Property Prediction with Information Bottleneck AAAI 2025
A Simple and Comprehensive Benchmark for Single-Cell Transcriptomics AAAI 2025
Learning from Negative Samples in Biomedical Generative Entity Linking ACL 2025
BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain ACL 2025
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models ACL 2025
SWAMamba: A Sliding Window Attention Mamba Framework for Predicting Translation Elongation Rates AAAI 2025
LIDDIA: Language-based Intelligent Drug Discovery Agent EMNLP 2025
BrainMAP: Learning Multiple Activation Pathways in Brain Networks AAAI 2025
SMAFIRA Shared Task at the BioNLP’2025 Workshop: Assessing the Similarity of the Research Goal ACL 2025
SpotDiff: Spatial Gene Expression Imputation Diffusion with Single-Cell RNA Sequencing Data Integration AAAI 2025
Virtual CRISPR: Can LLMs Predict CRISPR Screen Results? ACL 2025
Rethinking Cancer Gene Identification Through Graph Anomaly Analysis AAAI 2025