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Bioinformatics

638 directly classified papers

Papers per year

Papers

Overcoming Data Scarcity in Named Entity Recognition: Synthetic Data Generation with Large Language Models ACL 2025
PetEVAL: A veterinary free text electronic health records benchmark ACL 2025
Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models EMNLP 2025
HeMeNet: Heterogeneous Multichannel Equivariant Network for Protein Multi-task Learning AAAI 2025
BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain ACL 2025
DUSTED: Dual-Attention Enhanced Spatial Transcriptomics Denoiser AAAI 2025
Learning from Negative Samples in Biomedical Generative Entity Linking ACL 2025
M²N: A Progressive Macro-to-Micro 3D Modeling Scheme for Unveiling Drug-Target Affinity AAAI 2025
ExDDI: Explaining Drug-Drug Interaction Predictions with Natural Language AAAI 2025
Hierarchical Gradient-Based Genetic Sampling for Accurate Prediction of Biological Oscillations AAAI 2025
A Unified Framework for Human-Allied Learning of Probabilistic Circuits AAAI 2025
DO-CoLM: Dynamic 3D Conformation Relationships Capture with Self-Adaptive Ordering Molecular Relational Modeling in Language Models IJCAI 2025
MSA Generation with Seqs2Seqs Pretraining: Advancing Protein Structure Predictions NIPS 2024
HEST-1k: A Dataset For Spatial Transcriptomics and Histology Image Analysis NIPS 2024
A probability contrastive learning framework for 3D molecular representation learning NIPS 2024
Can Transformers Smell Like Humans? NIPS 2024
Training Compute-Optimal Protein Language Models NIPS 2024
A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis NIPS 2024
Graph Diffusion Policy Optimization NIPS 2024
AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction NIPS 2024
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity NIPS 2024
Pin-Tuning: Parameter-Efficient In-Context Tuning for Few-Shot Molecular Property Prediction NIPS 2024
Physical Consistency Bridges Heterogeneous Data in Molecular Multi-Task Learning NIPS 2024
FISBe: A Real-World Benchmark Dataset for Instance Segmentation of Long-Range Thin Filamentous Structures CVPR 2024
Absorb & Escape: Overcoming Single Model Limitations in Generating Heterogeneous Genomic Sequences NIPS 2024