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Bioinformatics
638 directly classified papers
Papers per year
2003: 1
2006: 15
2007: 6
2008: 9
2009: 7
2010: 15
2011: 8
2012: 18
2013: 12
2014: 11
2015: 5
2016: 7
2017: 13
2018: 25
2019: 37
2020: 61
2021: 33
2022: 60
2023: 70
2024: 113
2025: 109
2026: 3
Papers
RAGPPI: Retrieval-Augmented Generation Benchmark for Protein–Protein Interactions in Drug Discovery
EACL 2026
Cycle-Consistent Multi-Graph Matching for Self-Supervised Annotation of C. Elegans
WACV 2026
3D Cell Oversegmentation Correction via Geo-Wasserstein Divergence
WACV 2026
Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context
EMNLP 2025
Rethinking Text-based Protein Understanding: Retrieval or LLM?
EMNLP 2025
How to Make Large Language Models Generate 100% Valid Molecules?
EMNLP 2025
SMAFIRA Shared Task at the BioNLP’2025 Workshop: Assessing the Similarity of the Research Goal
ACL 2025
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models
ACL 2025
PreClinIE: An Annotated Corpus for Information Extraction in Preclinical Studies
ACL 2025
Virtual CRISPR: Can LLMs Predict CRISPR Screen Results?
ACL 2025
LIDDIA: Language-based Intelligent Drug Discovery Agent
EMNLP 2025
Towards Better Multi-task Learning: A Framework for Optimizing Dataset Combinations in Large Language Models
NAACL 2025
AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering
COLING 2025
GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration
NAACL 2025
Improving Cancer Gene Prediction by Enhancing Common Information Between the PPI Network and Gene Functional Association
AAAI 2025
Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity
AAAI 2025
scRAG: Hybrid Retrieval-Augmented Generation for LLM-based Cross-Tissue Single-Cell Annotation
ACL 2025
ASCENT: Annotation-free Self-supervised Contrastive Embeddings for 3D Neuron Tracking in Fluorescence Microscopy
ICCV 2025
BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain
ACL 2025
Integrating Biological Knowledge for Robust Microscopy Image Profiling on De Novo Cell Lines
ICCV 2025
Can Large Language Models Classify and Generate Antimicrobial Resistance Genes?
ACL 2025
Automatic Annotation Augmentation Boosts Translation between Molecules and Natural Language
NAACL 2025
Shared Task at Biolaysumm2025 : Extract then summarize approach Augmented with UMLS based Definition Retrieval for Lay Summary generation.
ACL 2025
GraphTranslate: Predicting Clinical Trial Translation using Graph Neural Networks on Biomedical Literature
ACL 2025
GeLLM³O: Generalizing Large Language Models for Multi-property Molecule Optimization
ACL 2025
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