← Research
Healthcare & Medicine › Research ›

Bioinformatics

638 directly classified papers

Papers per year

Papers

RAGPPI: Retrieval-Augmented Generation Benchmark for Protein–Protein Interactions in Drug Discovery EACL 2026
Cycle-Consistent Multi-Graph Matching for Self-Supervised Annotation of C. Elegans WACV 2026
3D Cell Oversegmentation Correction via Geo-Wasserstein Divergence WACV 2026
Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context EMNLP 2025
Rethinking Text-based Protein Understanding: Retrieval or LLM? EMNLP 2025
How to Make Large Language Models Generate 100% Valid Molecules? EMNLP 2025
SMAFIRA Shared Task at the BioNLP’2025 Workshop: Assessing the Similarity of the Research Goal ACL 2025
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models ACL 2025
PreClinIE: An Annotated Corpus for Information Extraction in Preclinical Studies ACL 2025
Virtual CRISPR: Can LLMs Predict CRISPR Screen Results? ACL 2025
LIDDIA: Language-based Intelligent Drug Discovery Agent EMNLP 2025
Towards Better Multi-task Learning: A Framework for Optimizing Dataset Combinations in Large Language Models NAACL 2025
AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering COLING 2025
GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration NAACL 2025
Improving Cancer Gene Prediction by Enhancing Common Information Between the PPI Network and Gene Functional Association AAAI 2025
Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity AAAI 2025
scRAG: Hybrid Retrieval-Augmented Generation for LLM-based Cross-Tissue Single-Cell Annotation ACL 2025
ASCENT: Annotation-free Self-supervised Contrastive Embeddings for 3D Neuron Tracking in Fluorescence Microscopy ICCV 2025
BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain ACL 2025
Integrating Biological Knowledge for Robust Microscopy Image Profiling on De Novo Cell Lines ICCV 2025
Can Large Language Models Classify and Generate Antimicrobial Resistance Genes? ACL 2025
Automatic Annotation Augmentation Boosts Translation between Molecules and Natural Language NAACL 2025
Shared Task at Biolaysumm2025 : Extract then summarize approach Augmented with UMLS based Definition Retrieval for Lay Summary generation. ACL 2025
GraphTranslate: Predicting Clinical Trial Translation using Graph Neural Networks on Biomedical Literature ACL 2025
GeLLM³O: Generalizing Large Language Models for Multi-property Molecule Optimization ACL 2025