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Bioinformatics

638 directly classified papers

Papers per year

Papers

Clustering High-dimensional Data with Ordered Weighted $\ell_1$ Regularization AISTATS 2023
Reprogramming Pretrained Language Models for Antibody Sequence Infilling ICML 2023
MolHF: A Hierarchical Normalizing Flow for Molecular Graph Generation IJCAI 2023
Generating Novel, Designable, and Diverse Protein Structures by Equivariantly Diffusing Oriented Residue Clouds ICML 2023
Multi-source Learning via Completion of Block-wise Overlapping Noisy Matrices JMLR 2023
Retrosynthetic Planning with Dual Value Networks ICML 2023
BIOptimus: Pre-training an Optimal Biomedical Language Model with Curriculum Learning for Named Entity Recognition ACL 2023
SE(3) diffusion model with application to protein backbone generation ICML 2023
Learning Subpocket Prototypes for Generalizable Structure-based Drug Design ICML 2023
GRASMOS: Graph Signage Model Selection for Gene Regulatory Networks AAAI 2023
Automatic Glossary of Clinical Terminology: a Large-Scale Dictionary of Biomedical Definitions Generated from Ontological Knowledge ACL 2023
Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference AAAI 2023
Generative Decoding of Visual Stimuli ICML 2023
Interpretable Chirality-Aware Graph Neural Network for Quantitative Structure Activity Relationship Modeling in Drug Discovery AAAI 2023
Extracting Drug-Drug and Protein-Protein Interactions from Text using a Continuous Update of Tree-Transformers ACL 2023
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance EMNLP 2023
Chemically Transferable Generative Backmapping of Coarse-Grained Proteins ICML 2023
Efficiently predicting high resolution mass spectra with graph neural networks ICML 2023
AniEE: A Dataset of Animal Experimental Literature for Event Extraction EMNLP 2023
Tensor Gaussian Process with Contraction for Multi-Channel Imaging Analysis ICML 2023
KBioXLM: A Knowledge-anchored Biomedical Multilingual Pretrained Language Model EMNLP 2023
BiSPN: Generating Entity Set and Relation Set Coherently in One Pass EMNLP 2023
Importance Weighted Expectation-Maximization for Protein Sequence Design ICML 2023
Metagenomic Binning using Connectivity-constrained Variational Autoencoders ICML 2023
ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts ICML 2023