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Bioinformatics

638 directly classified papers

Papers per year

Papers

Automated Extraction of Molecular Interactions and Pathway Knowledge using Large Language Model, Galactica: Opportunities and Challenges ACL 2023
MolHF: A Hierarchical Normalizing Flow for Molecular Graph Generation IJCAI 2023
Extracting Drug-Drug and Protein-Protein Interactions from Text using a Continuous Update of Tree-Transformers ACL 2023
Learning Subpocket Prototypes for Generalizable Structure-based Drug Design ICML 2023
Descriptive Knowledge Graph in Biomedical Domain EMNLP 2023
Spatially Resolved Gene Expression Prediction from Histology Images via Bi-modal Contrastive Learning NIPS 2023
Automatic Glossary of Clinical Terminology: a Large-Scale Dictionary of Biomedical Definitions Generated from Ontological Knowledge ACL 2023
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical Texts NIPS 2023
RH-BrainFS: Regional Heterogeneous Multimodal Brain Networks Fusion Strategy NIPS 2023
ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts ICML 2023
Chemically Transferable Generative Backmapping of Coarse-Grained Proteins ICML 2023
Unsupervised Contour Tracking of Live Cells by Mechanical and Cycle Consistency Losses CVPR 2023
PointListNet: Deep Learning on 3D Point Lists CVPR 2023
Generating Novel, Designable, and Diverse Protein Structures by Equivariantly Diffusing Oriented Residue Clouds ICML 2023
SE(3) diffusion model with application to protein backbone generation ICML 2023
Is the ranking of PubMed similar articles good enough? An evaluation of text similarity methods for three datasets ACL 2023
Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions ICML 2023
Biomedical Parallel Sentence Retrieval Using Large Language Models EMNLP 2023
Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System EMNLP 2023
Retrosynthetic Planning with Dual Value Networks ICML 2023
Metagenomic Binning using Connectivity-constrained Variational Autoencoders ICML 2023
GRASMOS: Graph Signage Model Selection for Gene Regulatory Networks AAAI 2023
DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design ICML 2023
Training Normalizing Flows from Dependent Data ICML 2023
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations EMNLP 2023