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Bioinformatics

239 directly classified papers

Papers per year

Papers

Learning Disentangled Equivariant Representation for Explicitly Controllable 3D Molecule Generation AAAI 2025
Synergy of GFlowNet and Protein Language Model Makes a Diverse Antibody Designer AAAI 2025
mRNA2vec: mRNA Embedding with Language Model in the 5'UTR-CDS for mRNA Design AAAI 2025
PriFold: Biological Priors Improve RNA Secondary Structure Predictions AAAI 2025
Blend the Separated: Mixture of Synergistic Experts for Data-Scarcity Drug-Target Interaction Prediction AAAI 2025
Generalized Implicit Neural Representations for Dynamic Molecular Surface Modeling AAAI 2025
PScalpel: A Machine Learning-based Guider for Protein Phase-Separating Behaviour Alteration AAAI 2025
Association Pattern-enhanced Molecular Representation Learning AAAI 2025
Boosting LLM’s Molecular Structure Elucidation with Knowledge Enhanced Tree Search Reasoning ACL 2025
How to Make Large Language Models Generate 100% Valid Molecules? EMNLP 2025
Exploit Your Latents: Coarse-Grained Protein Backmapping with Latent Diffusion Models AAAI 2025
SWAMamba: A Sliding Window Attention Mamba Framework for Predicting Translation Elongation Rates AAAI 2025
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models ACL 2025
Rethinking Cancer Gene Identification Through Graph Anomaly Analysis AAAI 2025
R-DTI: Drug Target Interaction Prediction Based on Second-Order Relevance Exploration AAAI 2025
Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning AAAI 2025
Rethinking Text-based Protein Understanding: Retrieval or LLM? EMNLP 2025
4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance AAAI 2025
3D Denoisers Are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation AAAI 2025
CryoDomain: Sequence-free Protein Domain Identification from Low-resolution Cryo-EM Density Maps AAAI 2025
FoldToken: Learning Protein Language via Vector Quantization and Beyond AAAI 2025
HAGO-Net: Hierarchical Geometric Message Passing for Molecular Representation Learning AAAI 2024
MANDREL: Modular Reinforcement Learning Pipelines for Material Discovery AAAI 2024
Biomedical Knowledge Graph Embedding with Householder Projection (Student Abstract) AAAI 2024
MapLE: Matching Molecular Analogues Promptly with Low Computational Resources by Multi-Metrics Evaluation (Student Abstract) AAAI 2024