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Bioinformatics

239 directly classified papers

Papers per year

Papers

HAGO-Net: Hierarchical Geometric Message Passing for Molecular Representation Learning AAAI 2024
Seeing Unseen: Discover Novel Biomedical Concepts via Geometry-Constrained Probabilistic Modeling CVPR 2024
Generalized Protein Pocket Generation with Prior-Informed Flow Matching NIPS 2024
MolTRES: Improving Chemical Language Representation Learning for Molecular Property Prediction EMNLP 2024
string2string: A Modern Python Library for String-to-String Algorithms ACL 2024
Repurformer: Transformers for Repurposing-Aware Molecule Generation ACL 2024
ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention NIPS 2024
Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NIPS 2024
MANDREL: Modular Reinforcement Learning Pipelines for Material Discovery AAAI 2024
Biomedical Knowledge Graph Embedding with Householder Projection (Student Abstract) AAAI 2024
L+M-24: Building a Dataset for Language+Molecules @ ACL 2024 ACL 2024
MapLE: Matching Molecular Analogues Promptly with Low Computational Resources by Multi-Metrics Evaluation (Student Abstract) AAAI 2024
Vector Field Oriented Diffusion Model for Crystal Material Generation AAAI 2024
Neural Network Reparametrization for Accelerated Optimization in Molecular Simulations NIPS 2024
MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts AAAI 2024
Uncertainty-Aware Yield Prediction with Multimodal Molecular Features AAAI 2024
Design Proteins Using Large Language Models: Enhancements and Comparative Analyses ACL 2024
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues AAAI 2024
ReactZyme: A Benchmark for Enzyme-Reaction Prediction NIPS 2024
MP-RNA: Unleashing Multi-species RNA Foundation Model via Calibrated Secondary Structure Prediction EMNLP 2024
AI for Science in the Era of Large Language Models EMNLP 2024
ReactXT: Understanding Molecular “Reaction-ship” via Reaction-Contextualized Molecule-Text Pretraining ACL 2024
SubgDiff: A Subgraph Diffusion Model to Improve Molecular Representation Learning NIPS 2024
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning NIPS 2024
RGFN: Synthesizable Molecular Generation Using GFlowNets NIPS 2024