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Bioinformatics

239 directly classified papers

Papers per year

Papers

Seeing Unseen: Discover Novel Biomedical Concepts via Geometry-Constrained Probabilistic Modeling CVPR 2024
MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts AAAI 2024
Mixture of neural fields for heterogeneous reconstruction in cryo-EM NIPS 2024
Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA NIPS 2024
Towards Stable Representations for Protein Interface Prediction NIPS 2024
MapLE: Matching Molecular Analogues Promptly with Low Computational Resources by Multi-Metrics Evaluation (Student Abstract) AAAI 2024
Conditional Synthesis of 3D Molecules with Time Correction Sampler NIPS 2024
string2string: A Modern Python Library for String-to-String Algorithms ACL 2024
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning ACL 2024
ReactXT: Understanding Molecular “Reaction-ship” via Reaction-Contextualized Molecule-Text Pretraining ACL 2024
L+M-24: Building a Dataset for Language+Molecules @ ACL 2024 ACL 2024
Exploring Molecular Pretraining Model at Scale NIPS 2024
RGFN: Synthesizable Molecular Generation Using GFlowNets NIPS 2024
Expert-level protocol translation for self-driving labs NIPS 2024
Generalized Protein Pocket Generation with Prior-Informed Flow Matching NIPS 2024
Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NIPS 2024
Enhancing Protein Mutation Effect Prediction through a Retrieval-Augmented Framework NIPS 2024
Integrating GNN and Neural ODEs for Estimating Non-Reciprocal Two-Body Interactions in Mixed-Species Collective Motion NIPS 2024
Conditional Diffusion Based on Discrete Graph Structures for Molecular Graph Generation AAAI 2023
Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model NIPS 2023
DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing NIPS 2023
ProBio: A Protocol-guided Multimodal Dataset for Molecular Biology Lab NIPS 2023
SaVeNet: A Scalable Vector Network for Enhanced Molecular Representation Learning NIPS 2023
Injecting Multimodal Information into Rigid Protein Docking via Bi-level Optimization NIPS 2023
Method for Designing Semantic Annotation of Sepsis Signs in Clinical Text ACL 2023