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Bioinformatics

239 directly classified papers

Papers per year

Papers

Rethinking Cancer Gene Identification Through Graph Anomaly Analysis AAAI 2025

Pre-Training Graph Neural Networks on Molecules by Using Subgraph-Conditioned Graph Information Bottleneck AAAI 2025

SWAMamba: A Sliding Window Attention Mamba Framework for Predicting Translation Elongation Rates AAAI 2025

GDiffRetro: Retrosynthesis Prediction with Dual Graph Enhanced Molecular Representation and Diffusion Generation AAAI 2025

Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning AAAI 2025

SpotDiff: Spatial Gene Expression Imputation Diffusion with Single-Cell RNA Sequencing Data Integration AAAI 2025

PScalpel: A Machine Learning-based Guider for Protein Phase-Separating Behaviour Alteration AAAI 2025

Robust Heterogeneous Graph Classification for Molecular Property Prediction with Information Bottleneck AAAI 2025

dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen AAAI 2025

Exploit Your Latents: Coarse-Grained Protein Backmapping with Latent Diffusion Models AAAI 2025

Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity AAAI 2025

3D Denoisers Are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation AAAI 2025

PriFold: Biological Priors Improve RNA Secondary Structure Predictions AAAI 2025

Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization AAAI 2025

Generalized Implicit Neural Representations for Dynamic Molecular Surface Modeling AAAI 2025

A Simple and Comprehensive Benchmark for Single-Cell Transcriptomics AAAI 2025

How to Make Large Language Models Generate 100% Valid Molecules? EMNLP 2025

FoldToken: Learning Protein Language via Vector Quantization and Beyond AAAI 2025

Enhancing Generalizability in Molecular Conformation Generation with METRIZATION-Informed Geometric Diffusion Pretraining AAAI 2025

CryoDomain: Sequence-free Protein Domain Identification from Low-resolution Cryo-EM Density Maps AAAI 2025

mRNA2vec: mRNA Embedding with Language Model in the 5'UTR-CDS for mRNA Design AAAI 2025

Motif-Oriented Representation Learning with Topology Refinement for Drug-Drug Interaction Prediction AAAI 2025

MOL-Mamba: Enhancing Molecular Representation with Structural & Electronic Insights AAAI 2025

4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance AAAI 2025

R-DTI: Drug Target Interaction Prediction Based on Second-Order Relevance Exploration AAAI 2025